STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpdA_43',5'-cyclic adenosine monophosphate phosphodiesterase CpdA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WP65. (314 aa)    
Predicted Functional Partners:
cyaB
Adenylate cyclase CyaB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69199.
    
 0.930
surE_2
5'-nucleotidase SurE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KI21.
  
  
  0.912
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
 
  0.901
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
     
 0.901
adoK
Adenosine kinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WID5.
    
  0.901
surE_1
5'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
  0.900
purB
Adenylosuccinate lyase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q7A0G9; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
  0.900
APW63491.1
Putative beta-propeller-type glycoside hydrolase of unknown function, putative beta-galactosidase; Manual prediction.
  
     0.543
APW62135.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.501
APW58848.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.459
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.