STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpsE_2Type II secretion system protein E; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P31742. (571 aa)    
Predicted Functional Partners:
epsF_2
Type II secretion system protein F; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45780.
 
 0.946
epsF_1
Type II secretion system protein F; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45780.
 
 0.896
epsF_3
Type II secretion system protein F; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45780.
 
 
 0.888
epsF_5
Type II secretion system protein F; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45780.
 
 0.888
gspF
Putative type II secretion system protein F; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P41441.
 
 
 0.887
epsF_4
Type II secretion system protein F; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45780.
 
 
 0.885
pppA
Leader peptidase PppA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q46836.
 
 
 0.805
outO
Type 4 prepilin-like proteins leader peptide-processing enzyme; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P31712.
 
 
 0.804
xpsD
Type II secretion system protein D; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P29041; Belongs to the bacterial secretin family.
 
 
 0.778
pilT_2
Twitching mobility protein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P24559.
 
  
0.649
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.