STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspA_2Phosphoserine phosphatase 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:D3DFG8. (209 aa)    
Predicted Functional Partners:
eno2_1
Enolase 2; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
     
 0.913
eno2_2
Enolase 2; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
     
 0.913
APW59456.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
    
 0.909
serA
D-3-phosphoglycerate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WNX3; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.903
APW58931.1
Hydroxypyruvate reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9X1C1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.903
APW63098.1
Hydroxypyruvate reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9X1C1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.903
APW63107.1
Hydroxypyruvate reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9X1C1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.903
garK
Glycerate 2-kinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23524; Belongs to the glycerate kinase type-1 family.
     
 0.903
pgi
Glucose-6-phosphate isomerase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A6T1; Belongs to the GPI family.
    
 0.843
tkt
Transketolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8YRU9; Belongs to the transketolase family.
  
 
 0.838
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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