STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpE_2Penicillin-binding protein 4*; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P32959. (481 aa)    
Predicted Functional Partners:
dapb3_2
Dipeptidyl aminopeptidase BIII; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:V5YMB3.
 
     0.886
dan
D-aminoacylase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P72349.
     0.470
estB_4
Esterase EstB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KX40.
 
   
0.422
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.