STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hhoAPutative serine protease HhoA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P72780. (351 aa)    
Predicted Functional Partners:
degP_1
Periplasmic serine endoprotease DegP; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0C0V0.
  
     0.775
ftsH3_2
ATP-dependent zinc metalloprotease FtsH 3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P72991.
    
 0.714
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.517
yjoB
Putative ATPase YjoB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34703; Belongs to the AAA ATPase family.
    
 0.448
phoR_4
Alkaline phosphatase synthesis sensor protein PhoR; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23545.
  
  
 0.430
APW59831.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
    0.424
APW62789.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.420
paaZ
Bifunctional protein PaaZ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P77455.
    
  0.418
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
  
  
 0.416
luxQ_4
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
  
  
 0.416
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.