STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW62807.14-hydroxybenzoate decarboxylase subunit C; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9Z8L0; Belongs to the UbiD family. (609 aa)    
Predicted Functional Partners:
ubiX
Flavin prenyltransferase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
 0.994
ubiA
4-hydroxybenzoate octaprenyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AGK1; Belongs to the UbiA prenyltransferase family.
 
  
 0.980
cyoE_2
Protoheme IX farnesyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00154.
    
 0.919
mqnA
Chorismate dehydratase; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
   
 0.822
mqnC
Cyclic dehypoxanthine futalosine synthase; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
   
 0.790
mqnE
Aminodeoxyfutalosine synthase; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate.
 
   
 0.788
mqnD
1,4-dihydroxy-6-naphtoate synthase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.
  
   
 0.783
APW62806.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.559
pyrK
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0DH76.
  
    0.528
ltaA
L-allo-threonine aldolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O07051.
       0.498
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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