STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolB_5Protein TolB; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00671. (908 aa)    
Predicted Functional Partners:
rpoA_2
DNA-directed RNA polymerase subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q664U6.
   
  0.712
APW64177.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
 
  0.699
APW60667.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
 
  0.684
ftsH3_2
ATP-dependent zinc metalloprotease FtsH 3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P72991.
    
  0.620
yrrB_4
TPR repeat-containing protein YrrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34452.
  
 
  0.584
APW63265.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
 
  0.565
yrrB_5
TPR repeat-containing protein YrrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34452.
  
 
  0.560
yrrB_3
TPR repeat-containing protein YrrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34452.
  
 
  0.554
yrrB_2
TPR repeat-containing protein YrrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34452.
  
 
  0.550
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.538
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.