STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW62879.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (331 aa)    
Predicted Functional Partners:
APW62880.1
Putative FAD-linked oxidoreductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WIT1.
       0.773
lutA_2
Lactate utilization protein A; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O07020.
       0.671
APW62878.1
Putative FAD-linked oxidoreductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WIT1.
       0.536
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P64191; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.410
APW62883.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.410
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.