STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfBLong-chain-fatty-acid--CoA ligase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O07610. (580 aa)    
Predicted Functional Partners:
dhaA
Haloalkane dehalogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A3G3.
 
 
 0.994
APW63093.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
 
 0.963
pksL
Polyketide synthase PksL; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q05470; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.956
APW63088.1
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WQP7.
 
   0.954
fabH_2
3-oxoacyl-[acyl-carrier-protein] synthase 3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9HYR2.
 
   
 0.953
APW58971.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
 
 0.921
APW62355.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
 
 0.921
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.882
pksE
Polyketide biosynthesis protein PksE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34787.
 
  
 0.870
fadB
Fatty acid oxidation complex subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P21177.
  
 
 0.818
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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