STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iscSCysteine desulfurase IscS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A6B7; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (394 aa)    
Predicted Functional Partners:
moeZ_2
Putative adenylyltransferase/sulfurtransferase MoeZ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WMN7.
   
 0.964
thiF
Sulfur carrier protein ThiS adenylyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P30138.
   
 0.964
sseA_1
3-mercaptopyruvate sulfurtransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P31142.
   
 0.918
sseA_2
Putative thiosulfate sulfurtransferase SseA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WHF7.
   
 0.918
erpA
Iron-sulfur cluster insertion protein ErpA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45344; Belongs to the HesB/IscA family.
 
  
 0.915
nifS
Cysteine desulfurase NifS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P05341.
  
  
 
0.914
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.892
APW58971.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
   
 
 0.730
APW62355.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
   
 
 0.730
APW64199.1
Putative HTH-type transcriptional regulator; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WME3.
 
  
 0.595
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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