STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbD_2Thiol:disulfide interchange protein DsbD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9JYM0. (955 aa)    
Predicted Functional Partners:
bdbD
Disulfide bond formation protein D; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O32218.
  
 
 0.882
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.831
msrA2
Peptide methionine sulfoxide reductase MsrA 2; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.831
msrB_1
Peptide methionine sulfoxide reductase MsrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q3JRF0.
   
 
 0.809
msrB_2
Peptide methionine sulfoxide reductase MsrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A746; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.809
msrB_3
Peptide methionine sulfoxide reductase MsrB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q3JRF0; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.809
APW60342.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.727
resA_1
Thiol-disulfide oxidoreductase ResA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q81SZ9; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.665
resA_9
Thiol-disulfide oxidoreductase ResA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q81SZ9.
 
 
 0.652
resA_6
Thiol-disulfide oxidoreductase ResA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q81SZ9.
  
 
 0.646
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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