STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lepB-2GT2 family glycosyltransferase; Manual prediction with dbCAN. (534 aa)    
Predicted Functional Partners:
ydgH
Putative membrane protein YdgH; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96706.
  
   
 0.492
APW63145.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.480
APW61794.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
   
    0.470
mmpL8
Sulfolipid-1 exporter MmpL8; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WJU5.
  
   
 0.464
APW61862.1
Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
    0.434
cypB
Bifunctional cytochrome P450/NADPH--P450 reductase 2; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O08336.
  
 0.426
nhaS3
High-affinity Na(+)/H(+) antiporter NhaS3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q55190.
  
  
 0.419
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.