Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APW63249.1 | topA | BSF38_04813 | BSF38_05235 | Hypothetical protein; Ab initio prediction:Prodigal:2.6. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.428 |
| APW63249.1 | xerC_3 | BSF38_04813 | BSF38_04814 | Hypothetical protein; Ab initio prediction:Prodigal:2.6. | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | 0.582 |
| apt | pyrE_2 | BSF38_03936 | BSF38_05759 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208. | 0.725 |
| apt | tyrA | BSF38_03936 | BSF38_05665 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Prephenate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69721. | 0.744 |
| apt | xerC_3 | BSF38_03936 | BSF38_04814 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | 0.471 |
| pyrE_2 | apt | BSF38_05759 | BSF38_03936 | Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.725 |
| pyrE_2 | tyrA | BSF38_05759 | BSF38_05665 | Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208. | Prephenate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69721. | 0.752 |
| pyrE_2 | xerC_3 | BSF38_05759 | BSF38_04814 | Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208. | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | 0.471 |
| topA | APW63249.1 | BSF38_05235 | BSF38_04813 | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Hypothetical protein; Ab initio prediction:Prodigal:2.6. | 0.428 |
| topA | xerC_3 | BSF38_05235 | BSF38_04814 | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | 0.415 |
| tyrA | apt | BSF38_05665 | BSF38_03936 | Prephenate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69721. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.744 |
| tyrA | pyrE_2 | BSF38_05665 | BSF38_05759 | Prephenate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69721. | Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208. | 0.752 |
| tyrA | xerC_3 | BSF38_05665 | BSF38_04814 | Prephenate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69721. | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | 0.435 |
| xerC_3 | APW63249.1 | BSF38_04814 | BSF38_04813 | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | Hypothetical protein; Ab initio prediction:Prodigal:2.6. | 0.582 |
| xerC_3 | apt | BSF38_04814 | BSF38_03936 | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.471 |
| xerC_3 | pyrE_2 | BSF38_04814 | BSF38_05759 | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208. | 0.471 |
| xerC_3 | topA | BSF38_04814 | BSF38_05235 | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.415 |
| xerC_3 | tyrA | BSF38_04814 | BSF38_05665 | Tyrosine recombinase XerC; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01808. | Prephenate dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69721. | 0.435 |