STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsE_4Putative glycosyltransferase EpsE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P71054. (329 aa)    
Predicted Functional Partners:
APW63257.1
Gamma-butyrobetaine dioxygenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P80193.
       0.773
APW59903.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
  
     0.768
APW59993.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
  
     0.749
APW60252.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
  
     0.676
APW60249.1
GT2 and GT4 families glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.575
APW63258.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.560
APW64049.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
 
    0.546
pgaC
GT2 family glycosyltransferase; Ab initio prediction:Prodigal:2.6; manual prediction with dbCAN.
 
    0.529
APW60259.1
GT2 and GT4 families glycosyltransferase; Manual prediction with dbCAN.
  
    0.481
tagH_2
Teichoic acids export ATP-binding protein TagH; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42954.
 
  
 0.432
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.