STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_9Transcriptional regulatory protein ZraR; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P14375. (455 aa)    
Predicted Functional Partners:
kinA_1
Sporulation kinase A; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P16497.
 
  0.978
zraS_4
Sensor protein ZraS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P14377.
 
 
  0.950
zraR_1
Transcriptional regulatory protein ZraR; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P25852.
  
  
 
0.912
APW60502.1
Response regulator receiver protein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:A7HD44.
  
 
0.912
rpoN
RNA polymerase sigma-54 factor; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P24255.
 
   
 0.784
zraS_2
Sensor protein ZraS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P14377.
 
 
 0.546
cheA_1
Chemotaxis protein CheA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q56310.
  
 
 0.543
zraS_8
Sensor protein ZraS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P37461.
 
 
   0.543
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54302.
  
 
 0.490
barA
Signal transduction histidine-protein kinase BarA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AEC5.
  
 
0.490
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.