STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comM_1Competence protein ComM; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45049. (423 aa)    
Predicted Functional Partners:
comM_2
Competence protein ComM; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45049.
 
     0.966
APW59975.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
 0.867
pyrE_2
Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208.
 
  
 0.774
APW58693.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6; Belongs to the UPF0102 family.
 
  
 0.733
APW62168.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
  
 0.623
APW63505.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.523
APW63506.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.501
tsf
Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
      0.491
def1
Peptide deformylase 1; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.462
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.450
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.