STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmlD_2dTDP-4-dehydrorhamnose reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O66251. (330 aa)    
Predicted Functional Partners:
rfbB_2
dTDP-glucose 4,6-dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P39630; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.990
APW61539.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
 
 0.985
rmlD_1
dTDP-4-dehydrorhamnose reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O66251.
  
  
 
0.922
rfbB_1
dTDP-glucose 4,6-dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P26391.
 
 0.868
wbbL_1
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WMY3.
 
  
 0.795
pgaC
GT2 family glycosyltransferase; Ab initio prediction:Prodigal:2.6; manual prediction with dbCAN.
 
  
 0.783
APW60249.1
GT2 and GT4 families glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.759
APW62926.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.735
tqsA_2
AI-2 transport protein TqsA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AFS5.
       0.723
APW59334.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.683
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.