STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW63825.1Putative alpha/beta-hydrolase-type carbohydrate esterase of unknown function; Manual prediction. (550 aa)    
Predicted Functional Partners:
APW62263.1
Putative beta-jelly-roll-type glycoside hydrolase of unknown function; Manual prediction.
  
     0.646
APW58886.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
   
 0.638
cadA_2-2
Distantly related to retaining beta-L-arabinofuranosidase from Bifidobacterium longum; Manual prediction with dbCAN.
  
     0.632
APW59097.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
   
 0.628
APW59098.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.628
APW59194.1
Putative Rossmann-fold-type glycoside hydrolase of unknown function; Manual prediction; clan CL0063.
 
    0.618
APW61859.1
Putative beta-jelly-roll-type glycoside hydrolase of unknown function; Manual prediction.
 
   
 0.616
APW58885.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.613
APW58795.1
Putative beta-propeller-type glycoside hydrolase of unknown function, putative beta-galactosidase; Manual prediction.
 
     0.603
ilvD_2
Dihydroxy-acid dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WKJ5; Belongs to the IlvD/Edd family.
 
   
 0.598
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.