STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
steT_5Serine/threonine exchanger SteT; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34739. (459 aa)    
Predicted Functional Partners:
puuP
Putrescine importer PuuP; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P76037.
  
     0.649
APW63183.1
Retaining alpha-glycosidase: cyclomaltodextrinase, maltogenic amylase, or neopullulanase; Manual prediction with dbCAN.
   
 0.640
APW63993.1
Trehalose synthase; Manual prediction with dbCAN.
   
 0.640
APW64188.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
    
 0.527
APW63938.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
   
   0.496
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.