STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW63993.1Trehalose synthase; Manual prediction with dbCAN. (1123 aa)    
Predicted Functional Partners:
APW60919.1
Retaining isoamylase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.994
APW59941.1
Retaining alpha-glycosidase; Manual prediction with dbCAN.
 
 
 0.992
APW60918.1
Malto-oligosyltrehalose synthase; Manual prediction with dbCAN.
 
 
 0.990
APW59639.1
Retaining isoamylase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 13 family.
 
 
0.986
APW60916.1
Retaining malto-oligosyltrehalose trehalohydrolase; Manual prediction with dbCAN.
 
 
0.986
APW63183.1
Retaining alpha-glycosidase: cyclomaltodextrinase, maltogenic amylase, or neopullulanase; Manual prediction with dbCAN.
 
0.986
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
 0.981
APW60994.1
Glycogen or starch phosphorylase; Manual prediction with dbCAN.
  
 0.978
APW63362.1
Retaining 4-alpha-glucanotransferase; Manual prediction with dbCAN.
  
 
 0.962
APW59990.1
Inverting alpha-glucosidase; Manual prediction with dbCAN.
    
 0.938
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.