STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW64199.1Putative HTH-type transcriptional regulator; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WME3. (139 aa)    
Predicted Functional Partners:
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
  
  
 0.646
nifS
Cysteine desulfurase NifS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P05341.
 
  
 0.596
iscS
Cysteine desulfurase IscS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A6B7; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.595
sat/cysC
Putative bifunctional SAT/APS kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.587
ygaP
Inner membrane protein YgaP; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P55734.
  
  
 0.437
hmp
Flavohemoprotein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P39662; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
     
 0.409
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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