STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000955735_00674Unannotated protein. (328 aa)    
Predicted Functional Partners:
GCA_000955735_00675
Unannotated protein.
 
 
 
 0.768
GCA_000955735_00782
Unannotated protein.
  
     0.768
GCA_000955735_00668
Unannotated protein.
   
   0.524
GCA_000955735_00673
Unannotated protein.
       0.469
GCA_000955735_00672
Unannotated protein.
       0.447
GCA_000955735_00930
Unannotated protein.
    
 
 0.445
GCA_000955735_00052
Unannotated protein.
   
 
 0.440
GCA_000955735_01917
Unannotated protein.
   
 
 0.440
GCA_000955735_00676
Unannotated protein.
   
   0.439
GCA_000955735_00802
Unannotated protein.
    
 
 0.400
Your Current Organism:
Caldicellulosiruptor naganoensis
NCBI taxonomy Id: 1387569
Other names: C. naganoensis NA10, Caldicellulosiruptor naganoensis NA10, Thermoanaerobacter cellulolyticus DSM 8991, Thermoanaerobacter cellulolyticus IFO 14436, Thermoanaerobacter cellulolyticus NA10, Thermoanaerobacter cellulolyticus NBRC 14436
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.