STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nssRNitrosative stress-response regulator, Crp/Fnr family; Pfam matches to PF00027.24 cNMP_binding, and to PF13545.1 HTH_Crp_2. (200 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.933
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.933
CPEL_0755
Peptidase, M16 family; Pfam matches to PF05193.16 Peptidase_M16_C, and to PF00675.15 Peptidase_M16.
  
    0.802
mqnC
Dehypoxanthinylfutalosine cyclase; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
       0.800
recG
ATP-dependent DNA helicase; Pfam matches to PF00270.24 DEAD, and to PF00271.26 Helicase_C.
       0.800
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.712
queD
6-carboxy-5,6,7,8-tetrahydropterin synthase; Pfam match to PF01242.14 PTPS.
    
  0.712
CPEL_0759
Hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.17 BPD_transp_1.
       0.644
papP
Pathogenesis-associated glutamine ABC transporter, permease protein; Pfam match to PF00528.17 BPD_transp_1.
       0.635
papQ
Pathogenesis-associated glutamine ABC transporter, ATP-binding protein; Pfam match to PF00005.22 ABC_tran.
  
    0.634
Your Current Organism:
Campylobacter peloridis
NCBI taxonomy Id: 1388753
Other names: C. peloridis LMG 23910, Campylobacter peloridis LMG 23910
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.