STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A017S1K6Putative R3H domain protein. (606 aa)    
Predicted Functional Partners:
A0A017SDC9
Putative mRNA 3'-end-processing protein rna14.
   
 0.955
A0A017SHE3
Fip1 domain-containing protein.
    
 0.952
A0A017SI27
mRNA cleavage and polyadenylation specificity factor complex subunit.
   
 0.942
A0A017SPU4
Putative cleavage and polyadenylation specifity factor, 73 kDa subunit.
   
 0.942
A0A017S900
YTH domain-containing protein.
    
 0.937
A0A017SGN0
Putative cleavage and polyadenylation specificity factor subunit A.
   
 0.934
A0A017SQ89
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 0.928
A0A017SKT2
Polyadenylation factor subunit 2.
    
 0.925
A0A017SSN5
CID domain-containing protein.
    
 0.921
A0A017S6A7
RNA-binding domain-containing protein.
   
 0.902
Your Current Organism:
Aspergillus ruber
NCBI taxonomy Id: 1388766
Other names: A. ruber CBS 135680, Aspergillus ruber CBS 135680, Aspergillus rubrum CBS 135680, Eurotium rubrum CBS 135680
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