STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrpCHTH-type transcriptional regulator LrpC. (145 aa)    
Predicted Functional Partners:
ldc
Lysine/ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.687
lrp_4
Leucine-responsive regulatory protein.
  
     0.555
asnC_3
Regulatory protein AsnC.
  
     0.484
lrp_2
Leucine-responsive regulatory protein.
  
     0.451
lrp_5
Leucine-responsive regulatory protein.
  
     0.429
lrp_9
Leucine-responsive regulatory protein.
  
     0.424
KPA20902.1
Hypothetical protein.
       0.420
cutL_2
Carbon monoxide dehydrogenase large chain.
  
    0.419
lrp_8
Leucine-responsive regulatory protein.
  
     0.406
Your Current Organism:
Shimia sp. SK013
NCBI taxonomy Id: 1389006
Other names: S. sp. SK013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.