STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
luxQ_5Autoinducer 2 sensor kinase/phosphatase LuxQ. (751 aa)    
Predicted Functional Partners:
afsQ1
Transcriptional regulatory protein AfsQ1.
 
0.999
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.999
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.998
rpfC
Sensory/regulatory protein RpfC.
 
0.998
arcB_2
Aerobic respiration control sensor protein ArcB.
 
0.998
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 0.998
arcB_4
Aerobic respiration control sensor protein ArcB.
 
0.998
luxQ_4
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.998
barA_1
Signal transduction histidine-protein kinase BarA.
 
0.998
pleD_2
Response regulator PleD.
 0.995
Your Current Organism:
Shimia sp. SK013
NCBI taxonomy Id: 1389006
Other names: S. sp. SK013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.