STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGW42487.1Transposase, undefined. (258 aa)    
Predicted Functional Partners:
AGW42488.1
Sugar phosphate isomerase/epimerase.
  
 0.998
AGW42489.1
Recombinase A.
 
  
 0.950
AGW42486.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.924
AGW41973.1
Phytoene synthase; Belongs to the HpcH/HpaI aldolase family.
   
    0.923
AGW41305.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.919
AGW42490.1
Hypothetical protein.
 
     0.917
AGW42002.1
Glucuronate isomerase.
     
 0.824
AGW40638.1
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.823
AGW42436.1
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     
  0.800
AGW42485.1
Proline/betaine transporter.
 
   
 0.735
Your Current Organism:
Leifsonia xyli cynodontis
NCBI taxonomy Id: 1389489
Other names: L. xyli subsp. cynodontis DSM 46306, Leifsonia xyli subsp. cynodontis DSM 46306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.