Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
pdp | pyrR | BAMF_3763 | BAMF_1618 | Pyrimidine-nucleoside phosphorylase. | Transcriptional attenuator and uracil phosphoribosyltransferase activity. | 0.918 |
pdp | udk | BAMF_3763 | BAMF_2541 | Pyrimidine-nucleoside phosphorylase. | Uridine kinase. | 0.928 |
pdp | upp | BAMF_3763 | BAMF_3526 | Pyrimidine-nucleoside phosphorylase. | Uracil phosphoribosyltransferase. | 0.950 |
pdp | yfkN | BAMF_3763 | BAMF_0752 | Pyrimidine-nucleoside phosphorylase. | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Flags: Precursor;, 5'-Nucleotidase/apyrase, 5'-nucleotidase, C-terminal domain, CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase. | 0.920 |
pdp | yhcR | BAMF_3763 | BAMF_1015 | Pyrimidine-nucleoside phosphorylase. | Non specific extracellular endonuclease cleaving RNA and DNA. | 0.915 |
pyrB | pyrC | BAMF_1620 | BAMF_1621 | Aspartate carbamoyltransferase. | Dihydroorotase. | 0.999 |
pyrB | pyrF | BAMF_1620 | BAMF_1626 | Aspartate carbamoyltransferase. | Orotidine 5'-phosphate decarboxylase. | 0.995 |
pyrB | pyrH | BAMF_1620 | BAMF_1723 | Aspartate carbamoyltransferase. | Uridylate kinase. | 0.518 |
pyrB | pyrP | BAMF_1620 | BAMF_1619 | Aspartate carbamoyltransferase. | Uracil permease. | 0.984 |
pyrB | pyrR | BAMF_1620 | BAMF_1618 | Aspartate carbamoyltransferase. | Transcriptional attenuator and uracil phosphoribosyltransferase activity. | 0.995 |
pyrB | upp | BAMF_1620 | BAMF_3526 | Aspartate carbamoyltransferase. | Uracil phosphoribosyltransferase. | 0.618 |
pyrC | pyrB | BAMF_1621 | BAMF_1620 | Dihydroorotase. | Aspartate carbamoyltransferase. | 0.999 |
pyrC | pyrF | BAMF_1621 | BAMF_1626 | Dihydroorotase. | Orotidine 5'-phosphate decarboxylase. | 0.992 |
pyrC | pyrP | BAMF_1621 | BAMF_1619 | Dihydroorotase. | Uracil permease. | 0.983 |
pyrC | pyrR | BAMF_1621 | BAMF_1618 | Dihydroorotase. | Transcriptional attenuator and uracil phosphoribosyltransferase activity. | 0.970 |
pyrF | pyrB | BAMF_1626 | BAMF_1620 | Orotidine 5'-phosphate decarboxylase. | Aspartate carbamoyltransferase. | 0.995 |
pyrF | pyrC | BAMF_1626 | BAMF_1621 | Orotidine 5'-phosphate decarboxylase. | Dihydroorotase. | 0.992 |
pyrF | pyrH | BAMF_1626 | BAMF_1723 | Orotidine 5'-phosphate decarboxylase. | Uridylate kinase. | 0.925 |
pyrF | pyrP | BAMF_1626 | BAMF_1619 | Orotidine 5'-phosphate decarboxylase. | Uracil permease. | 0.944 |
pyrF | pyrR | BAMF_1626 | BAMF_1618 | Orotidine 5'-phosphate decarboxylase. | Transcriptional attenuator and uracil phosphoribosyltransferase activity. | 0.991 |
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