Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000330805_00956 | GCA_000330805_03913 | GCA_000330805_00956 | GCA_000330805_03913 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_000330805_00956 | GCA_000330805_03918 | GCA_000330805_00956 | GCA_000330805_03918 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_000330805_00956 | GCA_000330805_03945 | GCA_000330805_00956 | GCA_000330805_03945 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_000330805_00956 | rpsB | GCA_000330805_00956 | GCA_000330805_00937 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
GCA_000330805_00956 | rpsC | GCA_000330805_00956 | GCA_000330805_03925 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
GCA_000330805_00956 | rpsD | GCA_000330805_00956 | GCA_000330805_02044 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
GCA_000330805_00956 | rpsF | GCA_000330805_00956 | GCA_000330805_02214 | Unannotated protein. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.995 |
GCA_000330805_00956 | rpsG | GCA_000330805_00956 | GCA_000330805_03914 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
GCA_000330805_00956 | rpsM | GCA_000330805_00956 | GCA_000330805_03944 | Unannotated protein. | Unannotated protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.998 |
GCA_000330805_00956 | rpsP | GCA_000330805_00956 | GCA_000330805_00887 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
GCA_000330805_03913 | GCA_000330805_00956 | GCA_000330805_03913 | GCA_000330805_00956 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_000330805_03913 | GCA_000330805_03918 | GCA_000330805_03913 | GCA_000330805_03918 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_000330805_03913 | GCA_000330805_03945 | GCA_000330805_03913 | GCA_000330805_03945 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_000330805_03913 | rpsB | GCA_000330805_03913 | GCA_000330805_00937 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
GCA_000330805_03913 | rpsC | GCA_000330805_03913 | GCA_000330805_03925 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
GCA_000330805_03913 | rpsD | GCA_000330805_03913 | GCA_000330805_02044 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
GCA_000330805_03913 | rpsF | GCA_000330805_03913 | GCA_000330805_02214 | Unannotated protein. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
GCA_000330805_03913 | rpsG | GCA_000330805_03913 | GCA_000330805_03914 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
GCA_000330805_03913 | rpsM | GCA_000330805_03913 | GCA_000330805_03944 | Unannotated protein. | Unannotated protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
GCA_000330805_03913 | rpsP | GCA_000330805_03913 | GCA_000330805_00887 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
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