STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF40492.1Hypothetical protein. (301 aa)    
Predicted Functional Partners:
SDF40458.1
Long-chain fatty acid transport protein.
 
     0.870
SDD47996.1
Hypothetical protein.
  
     0.711
SDD93814.1
Hypothetical protein.
  
     0.688
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.688
SDD60316.1
Hypothetical protein.
  
     0.647
SDE14880.1
Hypothetical protein.
  
     0.643
SDF36344.1
Autotransporter translocation and assembly factor TamB.
  
     0.629
SDE54155.1
Protein of unknown function.
  
     0.617
SDE76843.1
Hypothetical protein.
  
     0.604
SDF33810.1
Hypothetical protein.
  
     0.597
Your Current Organism:
Mucilaginibacter pineti
NCBI taxonomy Id: 1391627
Other names: CIP 110632, LMG 28160, LMG:28160, M. pineti, Mucilaginibacter pineti Paiva et al. 2014, Mucilaginibacter sp. M47C3B, strain M47C3B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.