STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_0452Aconitate hydratase. (654 aa)    
Predicted Functional Partners:
AKJ08_2818
Citrate synthase (si); Belongs to the citrate synthase family.
  
 0.977
AKJ08_1405
Isocitrate dehydrogenase.
  
 0.972
AKJ08_0154
Isocitrate dehydrogenase.
 0.938
AKJ08_0517
Aconitate hydratase.
  
  
 
0.920
AKJ08_1829
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 
0.900
rpmB
LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.671
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.669
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.665
rpmJ
LSU ribosomal protein L36p; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.648
rpsF
SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.648
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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