STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_0616Hypothetical protein. (718 aa)    
Predicted Functional Partners:
AKJ08_2289
Iron-sulfur cluster assembly scaffold protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.802
AKJ08_2511
Hypothetical protein.
  
     0.646
AKJ08_0617
Putative lipoprotein.
       0.603
AKJ08_0398
Aspartate aminotransferase.
 
    0.578
AKJ08_1194
Hypothetical protein.
  
     0.544
AKJ08_2510
Gluconate 2-dehydrogenase.
  
   
 0.509
AKJ08_3087
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.503
guaA
GMP synthase glutamine-hydrolyzing protein; Catalyzes the synthesis of GMP from XMP.
     
 0.474
AKJ08_1724
Multidrug resistance protein A.
 
  
 0.450
AKJ08_3066
Hypothetical protein.
  
     0.442
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.