STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sucCSuccinyl-CoA ligase [ADP-forming] beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (396 aa)    
Predicted Functional Partners:
AKJ08_1398
Succinyl-CoA ligase [ADP-forming] alpha chain.
 0.999
AKJ08_1399
Succinyl-CoA ligase [ADP-forming] alpha chain.
 0.999
AKJ08_1402
Succinate dehydrogenase flavoprotein subunit.
  
 0.995
AKJ08_1401
Succinate dehydrogenase iron-sulfur protein.
  
 0.994
AKJ08_0646
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
 
 0.979
AKJ08_0645
2-oxoglutarate dehydrogenase E1 component.
 
 0.959
AKJ08_0081
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.957
AKJ08_1580
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
 
 0.953
AKJ08_2818
Citrate synthase (si); Belongs to the citrate synthase family.
  
 
 0.952
AKJ08_1403
Succinate dehydrogenase cytochrome b subunit.
    
 0.949
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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