STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_1433Carbon monoxide dehydrogenase D protein. (306 aa)    
Predicted Functional Partners:
AKJ08_1209
Carbon monoxide dehydrogenase E protein.
 
     0.802
AKJ08_1434
Metallophosphoesterase.
       0.674
AKJ08_1435
Glycosyl transferase group 1.
       0.671
AKJ08_1191
Gfa-like protein.
  
    0.510
AKJ08_1436
Two-component response regulator.
       0.493
AKJ08_1437
Hypothetical protein.
       0.493
AKJ08_1432
Hypothetical protein.
  
    0.461
AKJ08_2773
Acyl dehydratase.
  
    0.403
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.