STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_1707General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD). (888 aa)    
Predicted Functional Partners:
AKJ08_1706
General secretion pathway protein C.
 
 
 0.995
AKJ08_1711
General secretion pathway protein G.
 
  
 0.939
AKJ08_1714
General secretion pathway protein J.
 
  
 0.918
AKJ08_1709
Type IV fimbrial assembly protein PilC.
 
  
 0.891
AKJ08_1708
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.861
AKJ08_1716
Type IV pilus biogenesis protein PilM.
 
  
 0.746
AKJ08_3402
Flagellar motor switch protein FliN.
  
  
 0.714
AKJ08_1712
General secretion pathway protein H.
  
  
 0.641
AKJ08_1713
General secretion pathway protein I.
  
  
 0.641
AKJ08_1715
Hypothetical protein.
     
 0.622
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.