STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_1895Hypothetical protein. (234 aa)    
Predicted Functional Partners:
AKJ08_1894
Hypothetical protein.
 
  
 0.971
AKJ08_1892
Type III restriction-modification system methylation subunit; Belongs to the N(4)/N(6)-methyltransferase family.
       0.506
AKJ08_1893
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.506
AKJ08_2032
Hypothetical protein.
  
  
 0.475
AKJ08_1890
Hydroxyacylglutathione hydrolase.
       0.459
AKJ08_1891
Multimodular transpeptidase-transglycosylase.
       0.459
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.