STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_1914Type IV prepilin peptidase TadV/CpaA; Belongs to the peptidase A24 family. (178 aa)    
Predicted Functional Partners:
AKJ08_1912
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
 
   
 0.963
AKJ08_1913
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family.
 
   
 0.926
AKJ08_1023
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
   
 0.818
AKJ08_1022
Flp pilus assembly protein TadB.
 
   
 0.810
AKJ08_1021
Flp pilus assembly protein RcpC/CpaB.
 
   
 0.804
AKJ08_2211
Hypothetical protein.
 
     0.773
AKJ08_1116
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.740
AKJ08_1607
Rossmann fold nucleotide-binding protein Smf.
  
  
 0.635
AKJ08_1361
Putative SigmaB asociated two-component system sensor protein.
   
 
 0.543
AKJ08_0894
Hypothetical protein.
   
  
 0.497
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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