STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_1916Hypothetical protein. (470 aa)    
Predicted Functional Partners:
AKJ08_1915
Hypothetical protein.
       0.773
glyS
Glycyl-tRNA synthetase beta chain.
       0.529
glyQ
Glycyl-tRNA synthetase alpha chain.
       0.528
AKJ08_1912
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
       0.454
AKJ08_1913
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family.
       0.454
AKJ08_1914
Type IV prepilin peptidase TadV/CpaA; Belongs to the peptidase A24 family.
       0.454
AKJ08_1025
FHA domain containing protein.
      
 0.430
AKJ08_2721
TonB family protein / TonB-dependent receptor.
  
    0.401
AKJ08_3693
TonB family protein / TonB-dependent receptor.
  
    0.401
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.