STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_1942Hypothetical protein. (929 aa)    
Predicted Functional Partners:
AKJ08_2351
Hypothetical protein.
  
     0.732
AKJ08_0263
Polyhydroxyalkanoic acid synthase.
  
     0.693
AKJ08_0890
TPR repeat protein.
  
     0.627
AKJ08_1081
Iron-sulfur cluster-binding protein, Rieske family.
  
     0.627
AKJ08_1194
Hypothetical protein.
  
     0.624
AKJ08_1831
Na(+)/H(+) antiporter.
  
     0.591
AKJ08_2002
Hypothetical protein.
  
     0.567
AKJ08_3620
Menaquinone biosynthesis related protein, putative DHNA-CoA thioesterase.
  
     0.566
AKJ08_2511
Hypothetical protein.
  
     0.561
AKJ08_2006
Hypothetical protein.
 
 
   0.558
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.