STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_2006Hypothetical protein. (829 aa)    
Predicted Functional Partners:
AKJ08_2004
Hypothetical protein.
 
 
0.994
AKJ08_3510
Signal transduction histidine kinase.
 
 
0.994
AKJ08_1360
Two-component sensor histidine kinase.
 
 
0.993
AKJ08_1361
Putative SigmaB asociated two-component system sensor protein.
 
 
0.993
AKJ08_0107
Chemotaxis protein methyltransferase CheR.
 
 
0.991
AKJ08_3680
Hypothetical protein.
 
 
0.990
AKJ08_3508
Response regulator/sensor histidine kinase.
 
0.987
AKJ08_3576
GGDEF domain protein.
 
 0.987
AKJ08_2396
Sensory box histidine kinase.
 
 
0.986
AKJ08_2794
Signal transduction histidine kinase CheA.
 
 
0.985
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.