STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_2010Tryptophan 2,3-dioxygenase. (265 aa)    
Predicted Functional Partners:
AKJ08_2009
Cysteine desulfurase.
 
  
  0.992
AKJ08_2101
Hypothetical protein.
 
 
 0.973
AKJ08_2550
Tryptophan 2,3-dioxygenase.
  
  
 
0.913
AKJ08_2008
Hydroxyneurosporene methyltransferase.
 
     0.855
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
     0.581
AKJ08_2554
Anthraniloyl-CoA monooxygenase.
 
  
 0.571
AKJ08_3448
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.542
AKJ08_0937
Para-aminobenzoate synthase, aminase component.
     
 0.436
AKJ08_3114
Acetyltransferase, GNAT family.
  
     0.423
AKJ08_1194
Hypothetical protein.
  
     0.419
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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