STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pal18K peptidoglycan-associated outer membrane lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (256 aa)    
Predicted Functional Partners:
tolB
tolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.953
AKJ08_2279
TPR repeat containing exported protein.
 
  
 0.827
AKJ08_0726
MotA/TolQ/ExbB proton channel family protein.
 
   
 0.800
AKJ08_1598
tolB protein precursor.
 
 
 0.781
bamA
Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.776
AKJ08_0725
Biopolymer transport protein ExbD/TolR.
 
 
 
 0.757
AKJ08_0870
tolB protein precursor.
  
 
 0.752
AKJ08_0991
Lipoprotein releasing system transmembrane protein LolC.
  
 
 
 0.707
AKJ08_0719
Outer membrane protein assembly factor YaeT precursor.
  
 
 0.676
AKJ08_2711
Outer membrane protein.
 
 
 
 0.669
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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