STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_2331Hypothetical protein. (210 aa)    
Predicted Functional Partners:
AKJ08_2330
Glycosyl transferase, family 2.
 
     0.825
AKJ08_2332
Hypothetical protein.
       0.645
AKJ08_2412
Omega-3 polyunsaturated fatty acid synthase.
  
 
 0.577
AKJ08_0476
Methyltransferase.
 
 
 0.554
clpB
ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
   
   0.479
AKJ08_2329
Hypothetical protein.
       0.437
AKJ08_0222
Menaquinone via futalosine polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.434
AKJ08_2649
Ubiquinone biosynthesis monooxygenase UbiB.
   
 
 0.432
AKJ08_1679
Glycosyl transferase, group 1 family protein.
 
     0.425
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.