STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_2404Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (826 aa)    
Predicted Functional Partners:
AKJ08_2004
Hypothetical protein.
 
 0.969
AKJ08_2006
Hypothetical protein.
 
 
0.906
AKJ08_1361
Putative SigmaB asociated two-component system sensor protein.
 
 
 
0.851
AKJ08_1028
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.830
AKJ08_1264
Two component transcriptional regulator, winged helix family.
  
   0.830
AKJ08_3296
Response regulator.
 
 
 0.829
AKJ08_2730
DNA-binding response regulator.
 
 0.823
AKJ08_2208
Two-component response regulator.
 
 
 0.821
AKJ08_2491
Phosphate regulon transcriptional regulatory protein PhoB (SphR).
 
 0.814
AKJ08_2906
Phosphate regulon transcriptional regulatory protein PhoB (SphR).
 
 
 0.811
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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