STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_2623Hypothetical protein. (181 aa)    
Predicted Functional Partners:
AKJ08_2621
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
       0.773
AKJ08_2622
Hypothetical protein.
       0.773
AKJ08_2620
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.625
AKJ08_2619
PTS system, fructose-specific IIA component.
       0.475
AKJ08_2624
Lipid A biosynthesis lauroyl acyltransferase.
       0.472
AKJ08_2625
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
       0.472
AKJ08_2626
UDP-glucose dehydrogenase.
       0.430
AKJ08_2618
DNA-binding response regulator ChvI.
       0.420
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
Server load: low (16%) [HD]