STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_32652,4-dienoyl-CoA reductase. (490 aa)    
Predicted Functional Partners:
AKJ08_2145
Electron transfer flavoprotein, beta subunit.
  
 
 0.651
AKJ08_3266
Glutathione peroxidase family protein; Belongs to the glutathione peroxidase family.
     
 0.628
AKJ08_0275
Putative autotransporter protein.
  
     0.618
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.550
AKJ08_3263
Hypothetical protein.
       0.548
AKJ08_1571
BNR repeat domain protein.
  
     0.528
AKJ08_2832
Hydrolase, alpha/beta hydrolase fold family.
 
     0.484
AKJ08_1927
UvrD/Rep helicase family protein.
  
     0.450
AKJ08_2484
Phosphate-selective porin O and P.
 
     0.414
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.