STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_3319Putative hydrolase. (664 aa)    
Predicted Functional Partners:
AKJ08_1423
Heat shock (putative periplasmic) protein YciM, precursor.
  
 
 
 0.726
AKJ08_3320
C4-type zinc finger protein, DksA/TraR family.
 
     0.692
AKJ08_1862
Ookinete protein.
  
     0.645
AKJ08_1652
Adventurous gliding motility protein K.
  
 
 
 0.634
AKJ08_1035
Hypothetical protein.
  
     0.553
AKJ08_1650
Hypothetical protein.
  
     0.551
AKJ08_2526
Cell division protein FtsK.
  
     0.495
AKJ08_2263
Phosphoesterase PA-phosphatase related protein.
  
    0.489
AKJ08_1682
Hypothetical protein.
  
     0.487
AKJ08_0555
TPR domain protein, putative component of TonB system.
  
     0.483
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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