STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_3475Plectin 1 isoform 8. (1042 aa)    
Predicted Functional Partners:
AKJ08_3474
Hypothetical protein.
 
     0.910
AKJ08_3471
Hypothetical protein.
 
     0.892
AKJ08_3472
Hypothetical protein.
 
     0.856
AKJ08_1849
Threonine dehydrogenase.
  
    0.773
AKJ08_1652
Adventurous gliding motility protein K.
  
     0.767
AKJ08_0555
TPR domain protein, putative component of TonB system.
  
     0.761
AKJ08_2526
Cell division protein FtsK.
 
     0.761
AKJ08_1850
Membrane protein, putative.
 
     0.760
AKJ08_1598
tolB protein precursor.
  
     0.748
AKJ08_1650
Hypothetical protein.
  
     0.743
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.