STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_3537Luciferase-like monooxygenase. (331 aa)    
Predicted Functional Partners:
AKJ08_3538
Hypothetical protein.
       0.666
AKJ08_1983
ABC-type putative sulfate transporter, periplasmic binding protein.
  
  
 0.607
AKJ08_3536
Transcriptional regulator, MecI family.
       0.601
AKJ08_3096
NADPH:quinone oxidoreductase.
  
 
 0.564
AKJ08_0122
ABC-type putative sulfate transporter, permease protein.
  
  
 0.543
AKJ08_1774
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
  
  
 0.536
AKJ08_2412
Omega-3 polyunsaturated fatty acid synthase.
     
 0.531
AKJ08_3539
Hypothetical protein.
       0.452
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.441
AKJ08_0516
Hypothetical protein.
      
 0.429
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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