STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08_3688Hypothetical protein. (226 aa)    
Predicted Functional Partners:
AKJ08_3371
Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.993
AKJ08_3201
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.968
AKJ08_3194
Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.966
AKJ08_3689
Cobalt-zinc-cadmium resistance protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.592
AKJ08_3686
Putative lipoprotein.
       0.527
AKJ08_3687
Putative lipoprotein.
       0.527
AKJ08_0631
Cytochrome c oxidase polypeptide III.
  
 
 0.485
AKJ08_1438
Hypothetical protein.
  
 
 0.485
AKJ08_3192
Cytochrome c oxidase polypeptide III.
  
 
 0.485
AKJ08_2640
Peptidyl-dipeptidase A precursor.
  
     0.443
Your Current Organism:
Vulgatibacter incomptus
NCBI taxonomy Id: 1391653
Other names: Cystobacteraceae bacterium B00001, DSM 27710, NBRC 109945, V. incomptus, Vulgatibacter incomptus Yamamoto et al. 2014, strain B00001
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